1 Load data

eqtl <- read.table('../../../output/strong_eqtl_names.txt', header = F)
df <- read.table('../output/first_try/report/summary_table.txt', header = T)
df$eqtl_name <- eqtl$V1[df$idx]
eqtl_split <- str_match(as.character(df$eqtl_name), '([A-Za-z0-9]+).[0-9]+_([A-Za-z0-9_]+)')
wrong.ind <- sum(df$ensembl_gene_id != eqtl_split[, 2] | df$leading_eqtl != eqtl_split[, 3])
sum(wrong.ind)
## [1] 0
df <- df[!wrong.ind,]
motif_logo_prefix <- '../output/first_try/report/motif_logo/'
mash_plot_prefix <- '../output/first_try/report/mash_plot/mash__idx'

2 Motifs obtained from enrichment analysis

df.sub <- df[df$motif_from == 'from_enrichment', ]
df.sub$motif_logo <- paste0('![](', motif_logo_prefix, df.sub$dbname, '__', df.sub$motif_id, '.png)')
df.sub$mash_plot <- paste0('![](', mash_plot_prefix, df.sub$idx, '.png)')
df.show <- df.sub
df.show <- df.show[, - which(colnames(df.show) %in% c('idx', 'eqtl_name', 'motif_from'))]
df.show <- df.show[order(df.show$r2, decreasing = T), ]
df.show$strand <- as.character(df.show$strand)
df.show$strand[df.show$strand == '-'] <- 'negative'
df.show$strand[df.show$strand == '+'] <- 'positive'
df.show %>% kable(format = "html", col.names = colnames(df.show)) %>%
  kable_styling() %>%
  kableExtra::scroll_box(width = "100%", height = "500px")
gene_name ensembl_gene_id leading_eqtl motif_snp r2 motif_id motif_name motif_qval motif_matched_sequence motif_snp.pos motif.length strand tissue dbname motif_logo mash_plot
3 WDR59 ENSG00000103091 16_74937232_T_A_b37 16_74938857_G_A_b37 0.4184012 MA0512.2 Rxra 0.0160 GGGGTCAAAGTTCG 13 14 negative heart1 jaspar
4 WDR59 ENSG00000103091 16_74937232_T_A_b37 16_74938857_G_A_b37 0.4184012 MA0677.1 Nr2f6 0.0508 GGGGTCAAAGTTCG 13 14 negative heart1 jaspar
1 ACSF2 ENSG00000167107 17_48534080_G_A_b37 17_48539997_T_C_b37 0.2039345 COT2_HUMAN.H11MO.1.A NA 0.0812 AGGGACAGGGGGCATGT 5 17 negative heart1 human
2 TMEM161A ENSG00000064545 19_19245771_A_G_b37 19_19243849_C_T_b37 0.0313135 COT2_HUMAN.H11MO.1.A NA 0.1510 GGGCTCTGGGCTCAGGG 16 17 negative heart1 human

3 Motifs obtained from pre-defined list

df.sub <- df[df$motif_from == 'from_predefined_list', ]
df.sub$motif_logo <- paste0('![](', motif_logo_prefix, df.sub$dbname, '__', df.sub$motif_id, '.png)')
df.sub$mash_plot <- paste0('![](', mash_plot_prefix, df.sub$idx, '.png)')
df.show <- df.sub
df.show <- df.show[, - which(colnames(df.show) %in% c('idx', 'eqtl_name', 'motif_from'))]
df.show <- df.show[order(df.show$r2, decreasing = T), ]
df.show$strand <- as.character(df.show$strand)
df.show$strand[df.show$strand == '-'] <- 'negative'
df.show$strand[df.show$strand == '+'] <- 'positive'
df.show %>% kable(format = "html", col.names = colnames(df.show)) %>%
  kable_styling() %>%
  kableExtra::scroll_box(width = "100%", height = "500px")
gene_name ensembl_gene_id leading_eqtl motif_snp r2 motif_id motif_name motif_qval motif_matched_sequence motif_snp.pos motif.length strand tissue dbname motif_logo mash_plot
100 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_333146_C_T_b37 1.0000000 SP1_HUMAN.H11MO.1.A NA 3.96e-03 GTGGGGCGGGGGCA 8 14 negative heart1 human
101 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_333146_C_T_b37 1.0000000 SP1_HUMAN.H11MO.0.A NA 2.24e-03 GTGGGGCGGGGGCAGATAAGGG 8 22 negative heart1 human
102 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_333146_C_T_b37 1.0000000 SP1_HUMAN.H11MO.0.A NA 3.75e-03 AGGGCGCGTGGGGCGGGGGCAG 15 22 negative heart1 human
103 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_333146_C_T_b37 1.0000000 SP1_HUMAN.H11MO.0.A NA 1.03e-02 CGGGGGCAGATAAGGGGGCCAG 2 22 negative heart1 human
104 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_333146_C_T_b37 1.0000000 SP1_HUMAN.H11MO.0.A NA 1.11e-02 CCAGGGCGCGTGGGGCGGGGGC 17 22 negative heart1 human
105 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_333146_C_T_b37 1.0000000 SP1_HUMAN.H11MO.0.A NA 1.69e-02 GGCGCGTGGGGCGGGGGCAGAT 13 22 negative heart1 human
126 SIPA1L3 ENSG00000105738 19_38670754_C_T_b37 19_38664097_C_T_b37 0.9998796 SP1_HUMAN.H11MO.0.A NA 1.20e-02 AGGGCGAGGGCCAGGTGGCTGC 14 22 negative heart1 human
127 SIPA1L3 ENSG00000105738 19_38670754_C_T_b37 19_38664097_C_T_b37 0.9998796 SP1_HUMAN.H11MO.0.A NA 1.27e-02 CCTGGGCGGGCAGCCACCTGGC 18 22 positive heart1 human
6 TMA7 ENSG00000232112 3_48479207_C_T_b37 3_48481647_G_A_b37 0.9997888 SP1_HUMAN.H11MO.1.A NA 1.92e-02 AGAGGGTGGGGCAG 2 14 positive heart1 human
7 TMA7 ENSG00000232112 3_48479207_C_T_b37 3_48481647_G_A_b37 0.9997888 SP1_HUMAN.H11MO.0.A NA 9.18e-03 AGAGGGTGGGGCAGACGCTCCG 2 22 positive heart1 human
131 CCDC157 ENSG00000187860 22_30765502_G_A_b37 22_30752942_C_A_b37 0.9667219 SP1_HUMAN.H11MO.0.A NA 9.18e-03 ACGGCGAGGGGACGGTCCCGGA 8 22 negative heart1 human
132 CCDC157 ENSG00000187860 22_30765502_G_A_b37 22_30752942_C_A_b37 0.9667219 SP1_HUMAN.H11MO.0.A NA 1.04e-02 AGGGGACGGTCCCGGAAGTGCG 2 22 negative heart1 human
115 PRKCA ENSG00000154229 17_64315205_A_C_b37 17_64298682_G_A_b37 0.8252726 SP1_HUMAN.H11MO.0.A NA 6.53e-04 GGTGGGCGGTGCCGCTCCGGGC 21 22 positive heart1 human
116 PRKCA ENSG00000154229 17_64315205_A_C_b37 17_64298682_G_A_b37 0.8252726 SP1_HUMAN.H11MO.0.A NA 1.38e-02 CGGCGGCAGAGGCGGCCCGGAG 16 22 negative heart1 human
117 RAB40B ENSG00000141542 17_80645286_C_G_b37 17_80656616_T_G_b37 0.5002093 SP1_HUMAN.H11MO.0.A NA 3.09e-03 CAATGGCGGGGCCGGGCGGGGA 22 22 negative heart1 human
118 RAB40B ENSG00000141542 17_80645286_C_G_b37 17_80656616_T_G_b37 0.5002093 SP1_HUMAN.H11MO.0.A NA 5.62e-03 GCCGGGCGGGGATGCGCGCTGT 12 22 negative heart1 human
119 RAB40B ENSG00000141542 17_80645286_C_G_b37 17_80656616_T_G_b37 0.5002093 SP1_HUMAN.H11MO.0.A NA 6.39e-03 GCGGGGCCGGGCGGGGATGCGC 17 22 negative heart1 human
120 RAB40B ENSG00000141542 17_80645286_C_G_b37 17_80656616_T_G_b37 0.5002093 SP1_HUMAN.H11MO.1.A NA 1.72e-02 GCCGGGCGGGGATG 12 14 negative heart1 human
44 RIC8A ENSG00000177963 11_246370_C_T_b37 11_207698_C_T_b37 0.3255945 SP1_HUMAN.H11MO.1.A NA 3.40e-04 GCGGGGCGGGGCCG 12 14 positive heart1 human
45 RIC8A ENSG00000177963 11_246370_C_T_b37 11_207698_C_T_b37 0.3255945 SP1_HUMAN.H11MO.0.A NA 6.67e-04 GTGGGGCGGGGCGGGGCCGTTT 17 22 positive heart1 human
46 RIC8A ENSG00000177963 11_246370_C_T_b37 11_207698_C_T_b37 0.3255945 SP1_HUMAN.H11MO.0.A NA 1.82e-03 GCGGGGCGGGGCCGTTTGCTTG 12 22 positive heart1 human
47 RIC8A ENSG00000177963 11_246370_C_T_b37 11_207698_C_T_b37 0.3255945 SP1_HUMAN.H11MO.0.A NA 7.39e-03 TGAACGTGGGGCGGGGCGGGGC 22 22 positive heart1 human
39 RIC8A ENSG00000177963 11_246370_C_T_b37 11_207693_CG_C_b37 0.3077630 SP1_HUMAN.H11MO.1.A NA 3.40e-04 GCGGGGCGGGGCCG 7 14 positive heart1 human
40 RIC8A ENSG00000177963 11_246370_C_T_b37 11_207693_CG_C_b37 0.3077630 SP1_HUMAN.H11MO.1.A NA 9.15e-04 GTGGGGCGGGGCGG 12 14 positive heart1 human
41 RIC8A ENSG00000177963 11_246370_C_T_b37 11_207693_CG_C_b37 0.3077630 SP1_HUMAN.H11MO.0.A NA 6.67e-04 GTGGGGCGGGGCGGGGCCGTTT 12 22 positive heart1 human
42 RIC8A ENSG00000177963 11_246370_C_T_b37 11_207693_CG_C_b37 0.3077630 SP1_HUMAN.H11MO.0.A NA 1.82e-03 GCGGGGCGGGGCCGTTTGCTTG 7 22 positive heart1 human
43 RIC8A ENSG00000177963 11_246370_C_T_b37 11_207693_CG_C_b37 0.3077630 SP1_HUMAN.H11MO.0.A NA 7.39e-03 TGAACGTGGGGCGGGGCGGGGC 17 22 positive heart1 human
8 GNB4 ENSG00000114450 3_179172979_G_T_b37 3_179168958_T_C_b37 0.2528323 SP1_HUMAN.H11MO.0.A NA 8.39e-03 CCCGGGAGGGACGAGGAGGGCG 14 22 negative heart1 human
71 CDH24 ENSG00000139880 14_23515986_A_T_b37 14_23525653_G_A_b37 0.2484954 SP1_HUMAN.H11MO.0.A NA 1.47e-02 ACAGGGTGGGGGACAGGGGGAG 6 22 positive heart1 human
5 MARC1 ENSG00000186205 1_220971048_G_T_b37 1_220970028_A_G_b37 0.1747694 SP1_HUMAN.H11MO.1.A NA 3.25e-02 ACTGGGCGGTGGCC 10 14 negative heart1 human
81 CDH24 ENSG00000139880 14_23515986_A_T_b37 14_23527115_G_A_b37 0.1531332 SP1_HUMAN.H11MO.0.A NA 1.45e-02 CGAGCGCGCGGTGAGGTGGGGA 16 22 positive heart1 human
72 CDH24 ENSG00000139880 14_23515986_A_T_b37 14_23525878_G_C_b37 0.1138306 SP1_HUMAN.H11MO.0.A NA 5.56e-03 CGGGGGCAGTTCCGGGCAGGCA 2 22 positive heart1 human
34 RIC8A ENSG00000177963 11_246370_C_T_b37 11_207400_A_G_b37 0.1037953 SP1_HUMAN.H11MO.0.A NA 2.75e-04 TGGGGGCGGGGCCGGAAGCTCT 20 22 negative heart1 human
37 RIC8A ENSG00000177963 11_246370_C_T_b37 11_207462_A_G_b37 0.1032297 SP1_HUMAN.H11MO.1.A NA 1.56e-02 AAGGGGCTGGGCTA 13 14 negative heart1 human
38 RIC8A ENSG00000177963 11_246370_C_T_b37 11_207462_A_G_b37 0.1032297 SP1_HUMAN.H11MO.0.A NA 7.22e-03 AAGGGGCTGGGCTATCTAGGGG 13 22 negative heart1 human
56 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_236473_C_T_b37 0.0971695 SP1_HUMAN.H11MO.0.A NA 1.01e-05 CGGGGGCGGGGCGCGGAGGCGG 11 22 negative heart1 human
57 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_236473_C_T_b37 0.0971695 SP1_HUMAN.H11MO.0.A NA 5.67e-05 AGGAGGCGGGGGCGGGGCGCGG 17 22 negative heart1 human
58 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_236473_C_T_b37 0.0971695 SP1_HUMAN.H11MO.1.A NA 3.74e-04 CGGGGGCGGGGCGC 11 14 negative heart1 human
59 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_236473_C_T_b37 0.0971695 SP1_HUMAN.H11MO.0.A NA 1.19e-03 GGGGCGCGGAGGCGGGACCGGG 4 22 negative heart1 human
60 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_236473_C_T_b37 0.0971695 SP1_HUMAN.H11MO.0.A NA 2.50e-03 GCGGGGCGCGGAGGCGGGACCG 6 22 negative heart1 human
61 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_236473_C_T_b37 0.0971695 SP1_HUMAN.H11MO.1.A NA 1.72e-02 GGGGCGCGGAGGCG 4 14 negative heart1 human
62 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_236473_C_T_b37 0.0971695 SP1_HUMAN.H11MO.1.A NA 1.92e-02 GCGGGGCGCGGAGG 6 14 negative heart1 human
63 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_236473_C_T_b37 0.0971695 SP1_HUMAN.H11MO.0.A NA 1.36e-02 GGGGCGGGGCGCGGAGGCGGGA 9 22 negative heart1 human
74 CDH24 ENSG00000139880 14_23515986_A_T_b37 14_23526882_G_A_b37 0.0898078 SP1_HUMAN.H11MO.0.A NA 3.96e-05 CGGGGGCGGGGGCGGAGGCGGC 10 22 positive heart1 human
75 CDH24 ENSG00000139880 14_23515986_A_T_b37 14_23526882_G_A_b37 0.0898078 SP1_HUMAN.H11MO.1.A NA 3.74e-04 CGGGGGCGGGGGCG 10 14 positive heart1 human
76 CDH24 ENSG00000139880 14_23515986_A_T_b37 14_23526882_G_A_b37 0.0898078 SP1_HUMAN.H11MO.0.A NA 3.03e-04 CGGGGGCGGAGGCGGCGCCGCG 4 22 positive heart1 human
77 CDH24 ENSG00000139880 14_23515986_A_T_b37 14_23526882_G_A_b37 0.0898078 SP1_HUMAN.H11MO.0.A NA 5.03e-04 GCGCGGCGGGGGCGGGGGCGGA 16 22 positive heart1 human
78 CDH24 ENSG00000139880 14_23515986_A_T_b37 14_23526882_G_A_b37 0.0898078 SP1_HUMAN.H11MO.1.A NA 2.99e-03 CGGGGGCGGAGGCG 4 14 positive heart1 human
79 CDH24 ENSG00000139880 14_23515986_A_T_b37 14_23526882_G_A_b37 0.0898078 SP1_HUMAN.H11MO.0.A NA 9.26e-03 GGCCCGCGCGGCGGGGGCGGGG 21 22 positive heart1 human
80 CDH24 ENSG00000139880 14_23515986_A_T_b37 14_23526882_G_A_b37 0.0898078 SP1_HUMAN.H11MO.0.A NA 1.14e-02 GGGGGCGGGGGCGGAGGCGGCG 9 22 positive heart1 human
35 RIC8A ENSG00000177963 11_246370_C_T_b37 11_207410_C_T_b37 0.0874622 SP1_HUMAN.H11MO.1.A NA 3.40e-04 TGGGGGCGGGGCCG 10 14 negative heart1 human
36 RIC8A ENSG00000177963 11_246370_C_T_b37 11_207410_C_T_b37 0.0874622 SP1_HUMAN.H11MO.0.A NA 2.75e-04 TGGGGGCGGGGCCGGAAGCTCT 10 22 negative heart1 human
32 RIC8A ENSG00000177963 11_246370_C_T_b37 11_207275_C_G_b37 0.0874485 SP1_HUMAN.H11MO.0.A NA 4.69e-04 TGGGGGCAGGGCCGGGCCGAAA 4 22 negative heart1 human
33 RIC8A ENSG00000177963 11_246370_C_T_b37 11_207275_C_G_b37 0.0874485 SP1_HUMAN.H11MO.1.A NA 3.32e-03 TGGGGGCAGGGCCG 4 14 negative heart1 human
133 RNF215 ENSG00000099999 22_30778459_A_G_b37 22_30784111_A_C_b37 0.0758763 MEF2A_HUMAN.H11MO.0.A NA 2.49e-01 TTGTATTTTTAGT 7 13 negative heart1 human
121 RAB40B ENSG00000141542 17_80645286_C_G_b37 17_80656859_T_A_b37 0.0754206 SP1_HUMAN.H11MO.0.A NA 3.50e-04 GCGGGGCGGGGTGGGGGCGATC 21 22 positive heart1 human
122 RAB40B ENSG00000141542 17_80645286_C_G_b37 17_80656859_T_A_b37 0.0754206 SP1_HUMAN.H11MO.0.A NA 5.78e-03 GCGGGGTGGGGGCGATCAGGGG 16 22 positive heart1 human
123 RAB40B ENSG00000141542 17_80645286_C_G_b37 17_80656859_T_A_b37 0.0754206 SP1_HUMAN.H11MO.0.A NA 1.13e-02 TGGGGGCGATCAGGGGGTGGGG 10 22 positive heart1 human
124 RAB40B ENSG00000141542 17_80645286_C_G_b37 17_80656859_T_A_b37 0.0754206 SP1_HUMAN.H11MO.0.A NA 1.52e-02 GGTGGGGGCGATCAGGGGGTGG 12 22 positive heart1 human
48 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_234249_T_C_b37 0.0699625 SP1_HUMAN.H11MO.0.A NA 1.45e-02 GAGGGGCAGGCATGGGTGCAAC 13 22 positive heart1 human
64 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_237209_G_A_b37 0.0421981 SP1_HUMAN.H11MO.0.A NA 5.38e-03 AGGGGGCAGGCGGGCGGAGGAG 16 22 positive heart1 human
65 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_237209_G_A_b37 0.0421981 SP1_HUMAN.H11MO.0.A NA 7.27e-03 AGACGGAGGGGGCAGGCGGGCG 22 22 positive heart1 human
66 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_237209_G_A_b37 0.0421981 SP1_HUMAN.H11MO.0.A NA 1.13e-02 GGCAGGCGGGCGGAGGAGCGGA 12 22 positive heart1 human
67 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_237209_G_A_b37 0.0421981 SP1_HUMAN.H11MO.0.A NA 1.59e-02 GACGGAGGGGGCAGGCGGGCGG 21 22 positive heart1 human
68 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_237209_G_A_b37 0.0421981 SP1_HUMAN.H11MO.1.A NA 3.25e-02 GGCGGGCGGAGGAG 8 14 positive heart1 human
73 CDH24 ENSG00000139880 14_23515986_A_T_b37 14_23526859_C_T_b37 0.0417457 SP1_HUMAN.H11MO.0.A NA 1.20e-02 GCCGCGCGGGCCCGGCTGGCCG 15 22 negative heart1 human
82 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_332558_CG_C_b37 0.0391795 SP1_HUMAN.H11MO.0.A NA 3.33e-04 ACGGGGCGGGGGGGGGAAGCGG 7 22 positive heart1 human
83 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_332558_CG_C_b37 0.0391795 SP1_HUMAN.H11MO.1.A NA 2.24e-03 ACGGGGCGGGGGGG 7 14 positive heart1 human
84 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_332558_CG_C_b37 0.0391795 SP1_HUMAN.H11MO.0.A NA 2.16e-03 GGTGGGGGGAACGGGGCGGGGG 17 22 positive heart1 human
85 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_332558_CG_C_b37 0.0391795 SP1_HUMAN.H11MO.0.A NA 2.91e-03 GCGGGGGGGGGAAGCGGGGGCA 2 22 positive heart1 human
86 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_332558_CG_C_b37 0.0391795 SP1_HUMAN.H11MO.0.A NA 4.25e-03 GGGGAACGGGGCGGGGGGGGGA 12 22 positive heart1 human
87 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_332558_CG_C_b37 0.0391795 SP1_HUMAN.H11MO.0.A NA 5.01e-03 CGGGGGGGGGAAGCGGGGGCAG 1 22 positive heart1 human
88 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_332558_CG_C_b37 0.0391795 SP1_HUMAN.H11MO.0.A NA 6.67e-03 GGGGGGAACGGGGCGGGGGGGG 14 22 positive heart1 human
89 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_332558_CG_C_b37 0.0391795 SP1_HUMAN.H11MO.0.A NA 7.80e-03 GGGCGGGGGGGGGAAGCGGGGG 4 22 positive heart1 human
90 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_332558_CG_C_b37 0.0391795 SP1_HUMAN.H11MO.0.A NA 9.01e-03 GGGGCGGGGGGGGGAAGCGGGG 5 22 positive heart1 human
91 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_332558_CG_C_b37 0.0391795 SP1_HUMAN.H11MO.0.A NA 9.03e-03 GGCGGGGGGGGGAAGCGGGGGC 3 22 positive heart1 human
92 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_332558_CG_C_b37 0.0391795 SP1_HUMAN.H11MO.0.A NA 9.18e-03 GGGGGGGGGAAGCGGGGGCAGA 0 22 positive heart1 human
9 KDM1B ENSG00000165097 6_18210109_G_A_b37 6_18185714_G_A_b37 0.0352981 MEF2A_HUMAN.H11MO.0.A NA 4.16e-01 TTATATTTTTAGT 12 13 positive heart1 human
24 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634435_G_T_b37 0.0300007 SP1_HUMAN.H11MO.0.A NA 3.60e-03 GGGGGGGGGGGTTCCCGGGAAG 17 22 positive heart1 human
25 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634435_G_T_b37 0.0300007 SP1_HUMAN.H11MO.0.A NA 5.65e-03 GGGGGGGGGGTTCCCGGGAAGC 16 22 positive heart1 human
26 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634435_G_T_b37 0.0300007 SP1_HUMAN.H11MO.0.A NA 5.86e-03 AGGGGGGGGGGGTTCCCGGGAA 18 22 positive heart1 human
27 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634435_G_T_b37 0.0300007 SP1_HUMAN.H11MO.0.A NA 7.41e-03 GGGGGGGGGTTCCCGGGAAGCG 15 22 positive heart1 human
28 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634435_G_T_b37 0.0300007 SP1_HUMAN.H11MO.0.A NA 9.18e-03 GAGGGGGGGGGGGTTCCCGGGA 19 22 positive heart1 human
29 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634435_G_T_b37 0.0300007 SP1_HUMAN.H11MO.0.A NA 9.80e-03 GGGGGGGGTTCCCGGGAAGCGG 14 22 positive heart1 human
30 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634435_G_T_b37 0.0300007 SP1_HUMAN.H11MO.0.A NA 1.42e-02 GGGAGGGGGGGGGGGTTCCCGG 21 22 positive heart1 human
31 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634435_G_T_b37 0.0300007 SP1_HUMAN.H11MO.0.A NA 1.68e-02 GGAGGGGGGGGGGGTTCCCGGG 20 22 positive heart1 human
108 ACSF2 ENSG00000167107 17_48534080_G_A_b37 17_48503419_G_A_b37 0.0197232 SP1_HUMAN.H11MO.0.A NA 6.34e-04 AGGGGGAGGGCCGCGGGGTCGG 4 22 positive heart1 human
109 ACSF2 ENSG00000167107 17_48534080_G_A_b37 17_48503419_G_A_b37 0.0197232 SP1_HUMAN.H11MO.0.A NA 1.53e-03 GGTGGGAGGGGGAGGGCCGCGG 10 22 positive heart1 human
110 ACSF2 ENSG00000167107 17_48534080_G_A_b37 17_48503419_G_A_b37 0.0197232 SP1_HUMAN.H11MO.0.A NA 2.33e-03 GAGGGGGAGGGCCGCGGGGTCG 5 22 positive heart1 human
111 ACSF2 ENSG00000167107 17_48534080_G_A_b37 17_48503419_G_A_b37 0.0197232 SP1_HUMAN.H11MO.1.A NA 1.56e-02 AGGGGGAGGGCCGC 4 14 positive heart1 human
112 ACSF2 ENSG00000167107 17_48534080_G_A_b37 17_48503419_G_A_b37 0.0197232 SP1_HUMAN.H11MO.0.A NA 1.17e-02 GTGGGAGGGGGAGGGCCGCGGG 9 22 positive heart1 human
113 ACSF2 ENSG00000167107 17_48534080_G_A_b37 17_48503419_G_A_b37 0.0197232 SP1_HUMAN.H11MO.0.A NA 1.35e-02 CGAGGGTGGGAGGGGGAGGGCC 14 22 positive heart1 human
114 ACSF2 ENSG00000167107 17_48534080_G_A_b37 17_48503419_G_A_b37 0.0197232 SP1_HUMAN.H11MO.1.A NA 2.92e-02 GGTGGGAGGGGGAG 10 14 positive heart1 human
128 CCDC157 ENSG00000187860 22_30765502_G_A_b37 22_30751808_C_CCCCA_b37 0.0180034 SP1_HUMAN.H11MO.1.A NA 7.53e-04 GGGGGGCGGGGGGG 14 14 negative heart1 human
129 CCDC157 ENSG00000187860 22_30765502_G_A_b37 22_30751808_C_CCCCA_b37 0.0180034 SP1_HUMAN.H11MO.0.A NA 1.57e-03 GGGGGGCGGGGGGGGGGAACAT 14 22 negative heart1 human
130 CCDC157 ENSG00000187860 22_30765502_G_A_b37 22_30751808_C_CCCCA_b37 0.0180034 SP1_HUMAN.H11MO.0.A NA 1.38e-02 AAGGGGGGCGGGGGGGGGGAAC 16 22 negative heart1 human
106 WDR59 ENSG00000103091 16_74937232_T_A_b37 16_75013673_A_G_b37 0.0166014 SP1_HUMAN.H11MO.0.A NA 1.41e-02 GGCAGGCGGATCTTGAGGTTGG 14 22 negative heart1 human
49 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_236370_C_G_b37 0.0125838 SP1_HUMAN.H11MO.0.A NA 6.70e-05 CGGGGGCGGGGCGAGTCCGGAG 3 22 negative heart1 human
50 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_236370_C_G_b37 0.0125838 SP1_HUMAN.H11MO.1.A NA 3.74e-04 CGGGGGCGGGGCGA 3 14 negative heart1 human
51 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_236370_C_G_b37 0.0125838 SP1_HUMAN.H11MO.0.A NA 1.86e-03 CGGGGCCGGGGCGCCGGGGGCG 17 22 negative heart1 human
52 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_236370_C_G_b37 0.0125838 SP1_HUMAN.H11MO.0.A NA 7.25e-03 GCGGGGCCGGGGCGCCGGGGGC 18 22 negative heart1 human
53 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_236370_C_G_b37 0.0125838 SP1_HUMAN.H11MO.0.A NA 1.18e-02 CCGGGGCGCCGGGGGCGGGGCG 12 22 negative heart1 human
54 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_236370_C_G_b37 0.0125838 SP1_HUMAN.H11MO.0.A NA 1.32e-02 GGGCCGGGGCGCCGGGGGCGGG 15 22 negative heart1 human
55 SIRT3 ENSG00000142082 11_235300_G_A_b37 11_236370_C_G_b37 0.0125838 SP1_HUMAN.H11MO.1.A NA 2.78e-02 GGGCGCCGGGGGCG 9 14 negative heart1 human
93 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_332903_TCCCCTGCTG_T_b37 0.0123125 SP1_HUMAN.H11MO.1.A NA 2.98e-02 CAGGGGAGGGTCTG -2 14 negative heart1 human
94 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_332903_TCCCCTGCTG_T_b37 0.0123125 SP1_HUMAN.H11MO.0.A NA 1.63e-02 CAGGGGAGGGTCTGGTCACTCA -2 22 negative heart1 human
96 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_333138_T_C_b37 0.0120166 SP1_HUMAN.H11MO.0.A NA 2.24e-03 GTGGGGCGGGGGCAGATAAGGG 16 22 negative heart1 human
97 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_333138_T_C_b37 0.0120166 GATA4_HUMAN.H11MO.0.A NA 7.05e-01 GCAGATAAGG 5 10 negative heart1 human
98 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_333138_T_C_b37 0.0120166 SP1_HUMAN.H11MO.0.A NA 1.03e-02 CGGGGGCAGATAAGGGGGCCAG 10 22 negative heart1 human
99 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_333138_T_C_b37 0.0120166 SP1_HUMAN.H11MO.0.A NA 1.69e-02 GGCGCGTGGGGCGGGGGCAGAT 21 22 negative heart1 human
10 DEK ENSG00000124795 6_18210109_G_A_b37 6_18264658_G_A_b37 0.0093912 SP1_HUMAN.H11MO.0.A NA 9.13e-03 ACGAGGAGGTTCTGGGAGGCGG 5 22 positive heart1 human
107 WDR59 ENSG00000103091 16_74937232_T_A_b37 16_75019070_C_A_b37 0.0081188 SP1_HUMAN.H11MO.0.A NA 1.64e-03 AAGGGGCGGAGCCTATGCTTGG 17 22 negative heart1 human
95 PDIA2 ENSG00000185615 16_333146_C_T_b37 16_333030_T_A_b37 0.0065366 SP1_HUMAN.H11MO.0.A NA 7.46e-03 CAGGGGAGGGGAGGCAGAAAGA 18 22 negative heart1 human
11 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634415_G_C_b37 0.0050818 SP1_HUMAN.H11MO.0.A NA 4.26e-05 GCGGGGCGGGGGGGGAGGGGGG 13 22 positive heart1 human
12 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634415_G_C_b37 0.0050818 SP1_HUMAN.H11MO.1.A NA 1.71e-03 GCGGGGCGGGGGGG 13 14 positive heart1 human
13 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634415_G_C_b37 0.0050818 SP1_HUMAN.H11MO.0.A NA 7.80e-04 GGCGGGGGGGGAGGGGGGGGGG 9 22 positive heart1 human
14 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634415_G_C_b37 0.0050818 SP1_HUMAN.H11MO.0.A NA 1.82e-03 GGGGGGAGGGGGGGGGGGTTCC 4 22 positive heart1 human
15 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634415_G_C_b37 0.0050818 SP1_HUMAN.H11MO.0.A NA 2.24e-03 GCGGGGGGGGAGGGGGGGGGGG 8 22 positive heart1 human
16 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634415_G_C_b37 0.0050818 SP1_HUMAN.H11MO.0.A NA 2.34e-03 GGGCGGGGGGGGAGGGGGGGGG 10 22 positive heart1 human
17 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634415_G_C_b37 0.0050818 SP1_HUMAN.H11MO.0.A NA 2.34e-03 GGGGCGGGGGGGGAGGGGGGGG 11 22 positive heart1 human
18 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634415_G_C_b37 0.0050818 SP1_HUMAN.H11MO.0.A NA 2.49e-03 CGGGGGGGGAGGGGGGGGGGGT 7 22 positive heart1 human
19 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634415_G_C_b37 0.0050818 SP1_HUMAN.H11MO.0.A NA 2.54e-03 TTGTGGCGGGGCGGGGGGGGAG 18 22 positive heart1 human
20 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634415_G_C_b37 0.0050818 SP1_HUMAN.H11MO.1.A NA 6.77e-03 GGGGGGAGGGGGGG 4 14 positive heart1 human
21 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634415_G_C_b37 0.0050818 SP1_HUMAN.H11MO.0.A NA 1.12e-02 GGGGGGGAGGGGGGGGGGGTTC 5 22 positive heart1 human
22 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634415_G_C_b37 0.0050818 SP1_HUMAN.H11MO.0.A NA 1.42e-02 GGGAGGGGGGGGGGGTTCCCGG 1 22 positive heart1 human
23 SAMD12 ENSG00000177570 8_119597380_A_G_b37 8_119634415_G_C_b37 0.0050818 SP1_HUMAN.H11MO.0.A NA 1.66e-02 GGGGGGGGAGGGGGGGGGGGTT 6 22 positive heart1 human
125 SIPA1L3 ENSG00000105738 19_38670754_C_T_b37 19_38397671_A_G_b37 0.0047724 TBX5_HUMAN.H11MO.0.D NA 4.09e-01 AGGTGTGT 8 8 negative heart1 human
69 APOA1 ENSG00000118137 11_116684560_C_T_b37 11_116708413_C_T_b37 0.0025891 SP1_HUMAN.H11MO.1.A NA 7.20e-03 CAGGGCCGGGGCTG 8 14 negative heart1 human
70 APOA1 ENSG00000118137 11_116684560_C_T_b37 11_116708413_C_T_b37 0.0025891 SP1_HUMAN.H11MO.1.A NA 1.26e-02 CCGGGGCTGGGCTT 3 14 negative heart1 human